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Accounting Rules Shake Up India’s E-Commerce Sector: What B2B & B2C Sellers Must Know

Accounting Rules Shake Up India’s E-Commerce Sector: What B2B & B2C Sellers Must Know

 

Introduction

From mid-2025 onward, India’s tax authorities have issued fresh clarifications around accounting and tax obligations specific to e-commerce companies (both B2B and B2C). These changes affect how online marketplaces, direct sellers, and third-party vendors must record revenue, deduct TDS, and apply GST. India’s move signals a push to bring digital commerce into a more transparent tax net. For e-commerce players across India, this means revising internal accounting policies, tightening compliance, and rethinking margins in light of new obligations.

 

Background / Context

Online commerce has grown explosively in India over the past decade. With that growth have come regulatory and tax challenges — how to track cross-border digital sales, ensure proper GST collection, and prevent tax base erosion by foreign entities.

Key regulatory developments

·         India’s Equalisation Levy was expanded in 2020 to cover non-resident e-commerce operators (2% on consideration) in addition to its original digital advertising scope.

·         However, in August 2024, the government abolished the 2% levy on e-commerce supplies from non-residents.

·         Concurrently, India is implementing GST 2.0 from 22 September 2025, with simplified rates and enhanced digital monitoring.

·         On the domestic front, Section 194O of the Income Tax Act imposes a 1% TDS by e-commerce operators on payments to sellers above certain thresholds.

These reforms are crucial because e-commerce firms straddle traditional trading, service delivery, and digital platform operations. Many accounting systems were never designed for such hybrid models. The need to adapt is now pressing.

Historically, many e-commerce transactions escaped rigorous oversight due to boundary issues — e.g. platform fees, commissions, cross-border flows, return flows. The tax authority’s tightening reflects a global trend of bringing digital commerce within the formal tax ambit.

 

Detailed Explanation of the Changes

Here is what the authorities have specified, challenged, or clarified in recent months — particularly relevant for accounting teams, tax advisors, and online sellers.

TDS under Section 194O

E-commerce operators (platforms) are required to deduct 1% TDS on gross amounts credited to sellers (or paid), when annual sales cross ₹5 lakh.

·         The threshold applies per seller (resident individual or HUF).

·         If PAN/Aadhaar is not provided, higher TDS (5%) may apply under Section 206AA.

·         It is gross amount (before returns/discounts), not net, that is subject to TDS.

From an accounting standpoint, this means platforms must treat TDS as a liability at the time of credit/payment and furnish proper statements to sellers for claiming credit.

GST & Tax Collection at Source (TCS) by E-Commerce Operators

Under the GST regime, e-commerce operators are often classified as “operators of electronic commerce” and have special obligations:

·         They must collect TCS (Tax Collection at Source) from the net value of taxable supplies made through them (typically up to 1%).

·         They should maintain detailed transaction records (supplier-wise, seller-wise, commission amounts).

·         They need to properly segregate commission/fee revenue (for the platform) versus supplies by third-party sellers.

Equalisation Levy Abolition

With the abolition of the 2% equalisation levy on e-commerce in August 2024, some cross-border compliance burdens have eased for non-resident sellers.
Nevertheless, other digital tax regimes — particularly the 6% levy on ad revenue (still under review) — and rules around significant economic presence (SEP) remain relevant.

GST 2.0 — Implications for E-Commerce

Implementation of the GST 2.0 regime brings:

·         A simplified slab structure (0%, 5%, 18%, 40%) and elimination of intermediate rates.

·         Enhanced digital compliance and real-time monitoring of invoices and reporting.

·         Pressure on margins, especially for consumer goods (B2C), due to rate changes.

In sum, e-commerce firms must revisit accounting policies for recognition of revenue, classification of platform income vs. trading income, tax credit treatment, and withholding / collection obligations.

 

Impact Analysis

These changes will ripple across the ecosystem — with winners, losers, and challenges to internal operations.

Who Gains / Loses

·         Small sellers may face a compliance burden, but also gain clarity on TDS and input credit claims.

·         Large marketplaces may benefit from clearer rules and reduced uncertainty, but will bear the cost of system upgrades and compliance overheads.

·         Foreign e-commerce players benefit from the levy's removal, but must still watch for digital PE / SEP risks.

·         Tax authorities are better equipped to enforce collection and reduce revenue leakage in the fast-growing e-commerce sector.

Practical Implications

Businesses / Sellers (B2B & B2C)

·         Must revisit accounting policies: revenue recognition, returns/discount accounting, commission income.

·         Need to maintain cash flow buffer to pay TDS and TCS liabilities timely.

·         Coordination between marketplace and sellers is crucial — statements, reconciliation, and audit trails must be robust.

·         Re-evaluate pricing strategy: cost absorption of TDS, TCS, and altered GST implications may require margin adjustments.

Auditors / Chartered Accountants

·         Must review whether clients’ accounting systems can handle multi-tier flows (platform → seller → customer).

·         Verify TDS / TCS compliance, correct remittance, and adequate disclosures.

·         Scrutinize input tax credit (ITC) claims, ensuring proper eligibility, especially when goods/services cross state lines.

·         Assess transfer pricing and digital PE / SEP risks for foreign e-commerce firms operating in India.

Taxpayers / End Users

·         Although primarily B2B/B2C sellers are affected, in some cases cost pressures may be passed to consumers.

·         Greater transparency may reduce hidden fees or surprises in billing.

 

Common Misunderstandings (and Errors)

·         Thinking TDS under 194O is on net sales (after returns). It is on gross.

·         Assuming equalisation levy is fully gone for all e-commerce. Only the 2% levy on non-resident e-commerce was removed; other digital rules still persist.

·         Confusing platform commission income with product sales income — they must be separately tracked.

·         Believing GST TCS and TDS under 194O can be netted off — they are distinct obligations.

·         Assuming foreign sellers without a physical presence are exempt — SEP / digital PE rules may still create exposure.

 

Expert Commentary

Having observed similar shifts in global digital tax landscapes— notably in OECD countries and the EU — I see India’s move as inevitable. A rigid carryover of traditional accounting norms cannot handle multi-party digital platforms. The authorities are sending a message: business models must adapt.

From my vantage point, mid-size marketplaces will be the most challenged; they must invest heavily in compliance infrastructure just when competition is intensifying. Yet, firms that adapt nimbly could gain a competitive moat by offering seamless compliance to their seller partners.

 

Conclusion & Action Steps

India’s updated accounting and tax regime for e-commerce signals a transformational shift — from ambiguity to enforcement, from informality to digital rigor. For B2B and B2C players alike, adapting is not optional.

Action steps to consider now:

1.      Audit your current accounting policies for e-commerce flows and identify gaps.

2.      Upgrade systems to capture TDS, TCS, commission splits, and reporting demands.

3.      Train your finance/tax team in the new regime — ensure timely remittance and disclosures.

4.      Engage tax advisors to assess SEP / digital PE exposure (especially for foreign sellers).

5.      Monitor regulatory updates, especially under GST 2.0 and potential further digital tax changes.

What felt novel a few years ago is now mainstream regulation. E-commerce firms that stay proactive will not just survive — they may gain an edge through compliance trust.

 

FAQs

Q1: Does the 1% TDS under Section 194O apply to foreign sellers?
A1: No. Section 194O applies to e-commerce participants who are residents (individuals or HUF) in India. Foreign sellers (non-residents) are generally out of scope for this.

Q2: After removal of the 2% equalisation levy, do foreign e-commerce operators face any digital tax in India?
A2: The 2% levy on e-commerce supplies was removed, but other digital tax regimes (e.g. ad levy, SEP / digital PE rules) may still apply depending on transaction nature.

Q3: Can a seller offset TDS deducted under 194O against income tax liability?
A3: Yes. The TDS certificate provided must be used by the seller to claim credit in their income tax returns, reducing tax liability.

Q4: How does the platform record the TDS / TCS in its books?
A4: The platform must show TDS / TCS as a liability when the underlying transaction occurs, then reduce it upon remittance. Also, platform commission income must be separately recorded from seller sales flows.

Q5: Will these changes affect small e-commerce sellers below the ₹5 lakh threshold?
A5: If a seller’s gross sales via the platform do not exceed ₹5 lakh in a year, the 1% TDS under 194O need not be deducted (subject to compliance with PAN/Aadhaar). However, GST / TCS obligations may still apply based on nature and turnover.

 

References / Source Links

·         PwC on equalisation levy & scope

·         EbizFiling on Section 194O details

·         InternationalTaxReview on 2% levy removal

·         Trustiics: digital tax and GST rules

·         Wikipedia / public sources on GST 2.0 reforms

 

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